3,073 research outputs found

    A novel method for measuring the bending rigidity of model lipid membranes by simulating tethers

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    The tensile force along a cylindrical lipid bilayer tube is proportional to the membrane's bending modulus and inversely proportional to the tube radius. We show that this relation, which is experimentally exploited to measure bending rigidities, can be applied with even greater ease in computer simulations. Using a coarse-grained bilayer model we efficiently obtain bending rigidities that compare very well with complementary measurements based on an analysis of thermal undulation modes. We furthermore illustrate that no deviations from simple quadratic continuum theory occur up to a radius of curvature comparable to the bilayer thickness.Comment: 7 pages, 5 figures, 1 tabl

    Optimized Periodic Coulomb Potential in Two Dimension

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    The 1/r Coulomb potential is calculated for a two dimensional system with periodic boundary conditions. Using polynomial splines in real space and a summation in reciprocal space we obtain numerically optimized potentials which allow us efficient calculations of any periodic (long-ranged) potential up to high precision. We discuss the parameter space of the optimized potential for the periodic Coulomb potential. Compared to the analytic Ewald potential, the optimized potentials can reach higher precisions by up to several orders of magnitude. We explicitly give simple expressions for fast calculations of the periodic Coulomb potential where the summation in reciprocal space is reduced to a few terms

    Shear flow pumping in open microfluidic systems

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    We propose to drive open microfluidic systems by shear in a covering fluid layer, e.g., oil covering water-filled chemical channels. The advantages as compared to other means of pumping are simpler forcing and prevention of evaporation of volatile components. We calculate the expected throughput for straight channels and show that devices can be built with off-the-shelf technology. Molecular dynamics simulations suggest that this concept is scalable down to the nanoscale.Comment: 4 pages, 4 figure, submitted to Phys. Rev. Let

    Theory and simulations of rigid polyelectrolytes

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    We present theoretical and numerical studies on stiff, linear polyelectrolytes within the framework of the cell model. We first review analytical results obtained on a mean-field Poisson-Boltzmann level, and then use molecular dynamics simulations to show, under which circumstances these fail quantitatively and qualitatively. For the hexagonally packed nematic phase of the polyelectrolytes we compute the osmotic coefficient as a function of density. In the presence of multivalent counterions it can become negative, leading to effective attractions. We show that this results from a reduced contribution of the virial part to the pressure. We compute the osmotic coefficient and ionic distribution functions from Poisson-Boltzmann theory with and without a recently proposed correlation correction, and also simulation results for the case of poly(para-phenylene) and compare it to recently obtained experimental data on this stiff polyelectrolyte. We also investigate ion-ion correlations in the strong coupling regime, and compare them to predictions of the recently advocated Wigner crystal theories.Comment: 32 pages, 15 figures, proceedings of the ASTATPHYS-MEX-2001, to be published in Mol. Phy

    Nonlinear Distortion in Wideband Radio Receivers and Analog-to-Digital Converters: Modeling and Digital Suppression

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    Emerging wireless communications systems aim to flexible and efficient usage of radio spectrum in order to increase data rates. The ultimate goal in this field is a cognitive radio. It employs spectrum sensing in order to locate spatially and temporally vacant spectrum chunks that can be used for communications. In order to achieve that, flexible and reconfigurable transceivers are needed. A software-defined radio can provide these features by having a highly-integrated wideband transceiver with minimum analog components and mostly relying on digital signal processing. This is also desired from size, cost, and power consumption point of view. However, several challenges arise, from which dynamic range is one of the most important. This is especially true on receiver side where several signals can be received simultaneously through a single receiver chain. In extreme cases the weakest signal can be almost 100 dB weaker than the strongest one. Due to the limited dynamic range of the receiver, the strongest signals may cause nonlinear distortion which deteriorates spectrum sensing capabilities and also reception of the weakest signals. The nonlinearities are stemming from the analog receiver components and also from analog-to-digital converters (ADCs). This is a performance bottleneck in many wideband communications and also radar receivers. The dynamic range challenges are already encountered in current devices, such as in wideband multi-operator receiver scenarios in mobile networks, and the challenges will have even more essential role in the future.This thesis focuses on aforementioned receiver scenarios and contributes to modeling and digital suppression of nonlinear distortion. A behavioral model for direct-conversion receiver nonlinearities is derived and it jointly takes into account RF, mixer, and baseband nonlinearities together with I/Q imbalance. The model is then exploited in suppression of receiver nonlinearities. The considered method is based on adaptive digital post-processing and does not require any analog hardware modification. It is able to extract all the necessary information directly from the received waveform in order to suppress the nonlinear distortion caused by the strongest blocker signals inside the reception band.In addition, the nonlinearities of ADCs are considered. Even if the dynamic range of the analog receiver components is not limiting the performance, ADCs may cause considerable amount of nonlinear distortion. It can originate, e.g., from undeliberate variations of quantization levels. Furthermore, the received waveform may exceed the nominal voltage range of the ADC due to signal power variations. This causes unintentional signal clipping which creates severe nonlinear distortion. In this thesis, a Fourier series based model is derived for the signal clipping caused by ADCs. Furthermore, four different methods are considered for suppressing ADC nonlinearities, especially unintentional signal clipping. The methods exploit polynomial modeling, interpolation, or symbol decisions for suppressing the distortion. The common factor is that all the methods are based on digital post-processing and are able to continuously adapt to variations in the received waveform and in the receiver itself. This is a very important aspect in wideband receivers, especially in cognitive radios, when the flexibility and state-of-the-art performance is required

    Zircons from Syros, Cyclades, Greece—Recrystallization and Mobilization of Zircon During High-Pressure Metamorphism

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    Zircons were studied from high-pressure/low-temperature metamorphosed meta-igneous lithologies from Syros. These rocks carry several zircon generations related to each other by dissolution-reprecipitation processes. One generation is pristine zircon that shows growth zoning, relatively elevated contents of trivalent cations and high Th/U ratios. The other end-member is a skeletal zircon generation with negligible trivalent cation contents and low Th/U ratios (≤0·1). Texturally between these two, there is a range of zircon crystals with complex inclusion populations of Y-HREE-Th phases and fluid inclusions, showing variable progress of replacement- recrystallization. Both end-members yield distinct sensitive high-resolution ion microprobe (SHRIMP) U-Pb ages. The pristine generation has an age of 80·2 ± 1·6 Ma from a metagabbro, and 76·4 ± 2·1 Ma from a meta-plagiogranite dyke. The skeletal, low-Th/U zircon generation yields an age of 52·4 ± 0·8 Ma. The older, Late Cretaceous, zircons are interpreted to date emplacement of the magmatic protoliths in a small segment of oceanic crust. The younger, Eocene, age, however, dates a zircon recrystallization event, which possibly coincides with high solubility and mobility of high field strength elements in a high-pressure aqueous fluid phase. Intergrowth relations between zircon and peak-metamorphic garnet, and excellent agreement of the U-Pb ages with white mica Ar-Ar ages for the same samples support the conclusion that Eocene is the true age of high-pressure metamorphism on Syro

    LNCS

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    We present a formal framework for repairing infinite-state, imperative, sequential programs, with (possibly recursive) procedures and multiple assertions; the framework can generate repaired programs by modifying the original erroneous program in multiple program locations, and can ensure the readability of the repaired program using user-defined expression templates; the framework also generates a set of inductive assertions that serve as a proof of correctness of the repaired program. As a step toward integrating programmer intent and intuition in automated program repair, we present a cost-aware formulation - given a cost function associated with permissible statement modifications, the goal is to ensure that the total program modification cost does not exceed a given repair budget. As part of our predicate abstractionbased solution framework, we present a sound and complete algorithm for repair of Boolean programs. We have developed a prototype tool based on SMT solving and used it successfully to repair diverse errors in benchmark C programs
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